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- Pedobacter lusitanus sp. nov., isolated from sludge of a deactivated uranium minePublication . Covas, Cláudia; Caetano, Tânia; Cruz, Andreia; Santos, Tiago; Dias, Liliana; Klein, Guenter; Abdulmawjood, Amir; Rodriguez-Alcala, Luis M.; Pimentel, Ligia L.; Gomes, Ana; Freitas, Ana Cristina; Garcia-Serrano, Alba; Fontecha, Javier; Mendo, SoniaStrain NL19(T) is a Gram-stain-negative, aerobic bacterium that was isolated from sludge of a deactivated uranium mine in Portugal. 16S rRNA gene sequence analysis revealed that strain NL19(T) is a member of the genus Pedobacter and closely related to the strains Pedobacter himalayensis MTCC 6384(T), Pedobacter cryoconitis DSM 14825(T), Pedobacter westerhofensis DSM 19036 (T) and Pedobacter hartonius DSM 19033(T). It had a DNA G+C content of 40.8 mol%, which agreed with the genus description. The main fatty acids included C-16 : 1 omega 7c, C-14 : 1 omega 5c, C-4 : 0, iso-C-17 : 0, iso-C-17 : 0 3-OH, C-16 : 0, anteiso-C-15 : 0 and isoC(15 : 0) 3-OH. The main lipids present were phospholipids (60 %) and sphingolipids (35 %). The most abundant phospholipids included phosphatidylethanolamine, phosphatidylinositol and phosphatidylcholine. Menaquinone-7 (MK-7) was the only isoprenoid quinone detected. DNA-DNA hybridization similarities between strain NL19(T) and Pedobacter himalayensis MTCC 6384(T), Pedobacter cryoconitis DSM 14825(T), Pedobacter westerhofensis DSM 19036(T) and Pedobacter hartonius DSM 19033(T) were 15.3, 16.2, 11.5 and 16.0 %, respectively. Strain NL19(T) can also be distinguished from these four species based on gyrB and intergenic transcribed spacers (ITS) sequences and by some phenotypic traits such as NaCl tolerance, pH, growth temperature and carbon source utilization. Strain NL19(T) represents a novel species of the genus Pedobacter, for which the name Pedobacter lusitanus sp. nov. is proposed. The type strain is NL19(T) (= LMG 29220(T) = CECT 9028(T)). An amended description of Pedobacter himalayensis is also included.
- Evolving trends in next-generation probiotics: a 5W1H perspectivePublication . Almeida, Diana; Machado, Daniela; Andrade, José Carlos; Mendo, Sónia; Gomes, Ana Maria; Freitas, Ana CristinaIn recent years, scientific community has been gathering increasingly more insight on the dynamics that are at play in metabolic and inflammatory disorders. These rapidly growing conditions are reaching epidemic proportions, bringing clinicians and researcher’s new challenges. The specific roles and modulating properties that beneficial/probiotic bacteria hold in the context of the gut ecosystem seem to be key to avert these inflammatory and diet-related disorders. Faecalibacterium prausnitzii, Akkermansia muciniphila and Eubacterium hallii have been identified as candidates for next generation probiotics (NGPs) with exciting potential for the prevention and treatment of such of dysbiosis-associated diseases. The challenges of these non-conventional native gut bacteria lie mainly on their extreme sensitivity to O2 traces. If these strains are to be used successfully in food, supplements or drugs they need to be stable and active in humans. In the present review, we present an overall perspective of the most updated scientific literature on the newly called NGPs through the 5W1H (What, Why, Who, Where, When, and How) method, an innovative and attractive problem-solving approach that provides the reader an effective understanding of the issue at hand.